seqRFLP (version 1.0.1)

enzCut: Restriction enzyme cutting pattern

Description

Function for calculating Restriction enzyme cutting pattern

Usage

enzCut(DNAsq, enznames, enzdata = enzdata)

Arguments

DNAsq

The input fasta data.

enznames

A character vector of the restriction enzyme's names, from one to multiple names.

enzdata

Dataframe with first column for enzyme names, second column for enzyme cutting patterns.

Value

enz

The selected restriction enzyme.

RFLP.site

The sites recognized by enzyme.

RFLP.frag

The fragments generated by enzyme cutting.

TRFLP

The fragments predicted by TRFLP

Details

Users could add restriction sites manually according to the enzdata styles.

References

None.

See Also

See Also frag.dat

Examples

## enzCut() example
data(enzdata)
enznames <- c("EcoRI", "Acc65I")
data(fil.phy)
fas <- ConvFas(fil = fil.phy, type = "phy")
enzCut(DNAsq = fas[2], enznames = "AluI", enzdata = enzdata)