plotGCcontent

plotGCcontent-methods

plotGCcontent,Fastqq-method

<code>Fastqq</code>: Object which contains collected values from 
        <code>nFiles</code> FASTQ files.

object

<code>integer</code>(optional): The main title displayed on top of 
        the plot. When missing, a standard text is printed.

main

Other arguments which are passed to the internally called 
        plot function.

 The function creates plots on proportions of relative GC content.
    For each FASTQ file from wich data is contained, 
    one separate line is plotted. 
    A value of 0.1 at the proportion of 40 says that 0.1 % of the reads have
    40 % GC content.

kmer

Analyze read length, phred scores and alphabet frequency and DNA k-mers on uncompressed and compressed fastq files.

Wolfgang Kaisers

seqTools

Analysis of nucleotide, sequence and quality content on fastq
files.

plotGCcontent function

The function creates plots on proportions of relative GC content.
    For each FASTQ file from wich data is contained, 
    one separate line is plotted. 
    A value of 0.1 at the proportion of 40 says that 0.1 % of the reads have
    40 % GC content.

plotGCcontent: plotGCcontent: Plots the proportions of relative GC content for all FASTQ files.

Description

Usage

Arguments

Value

Details

See Also

Examples