simFastqqRunTimes

<code>numeric</code>. k-mer sizes which are passed to <code>fastqq</code>.
        Default value is 2:15.

<code>numeric</code>. Number of simulated reads in FASTQ-file.
        Default value is (100, 1000, ..., 10000000).

nSeq

<code>character</code>. The output can be placed in a separate
        directory. When not existant, the function tries to create 'filedir'. 
        The function throws an error when writing is not permitted in the given
        directory (Could not open file ...).

filedir

 For each combination of the parameters k and nSeq, 
    the function writes one FASTQ file and collects the data.
    The FASTQ files are equally structured: 
    Each read contains 17 randomly selected DNA 6-mers.
    Therefore the read-length is always 102.

Analyze read length, phred scores and alphabet frequency and DNA k-mers on uncompressed and compressed fastq files.

Wolfgang Kaisers

seqTools

Analysis of nucleotide, sequence and quality content on fastq
files.

simFastqqRunTimes function

For each combination of the parameters k and nSeq, 
    the function writes one FASTQ file and collects the data.
    The FASTQ files are equally structured: 
    Each read contains 17 randomly selected DNA 6-mers.
    Therefore the read-length is always 102.

simFastqqRunTimes: For given values of k and nSeq the function creates
    FASTQ files with simulated data, collects k-mer data with the fastqq
    function and reports the run times for the data collection.

simFastqqRunTimes: simFastqqRunTimes: For given values of k and nSeq the function creates FASTQ files with simulated data, collects k-mer data with the fastqq function and reports the run times for the data collection.

Description

Usage

Arguments

Value

Details

Examples