seqinr (version 1.0-3)

SeqAcnucWeb: Sequence coming from an ACNUC data bases located on the web

Description

as.SeqAcnucWeb is called by many functions, for instance by query.SeqAcnucWeb, and should not directly be called by the user. It creates an object of class SeqAcnucWeb. is.SeqAcnucWeb returns TRUE if the object is of class SeqAcnucWeb.

Usage

as.SeqAcnucWeb(object,length, frame, ncbigc,socket=F)
is.SeqAcnucWeb(object)

Arguments

object

a string giving the name of a sequence presents in the data base

length

a string giving the length of the sequence presents in the data base

frame

a string giving the frame of the sequence presents in the data base

ncbigc

a string giving the ncbi genetic code of the sequence presents in the data base

socket

an object of class socket

Value

• as.SeqAcnucWeb returns an object sequence of class SeqAcnucWeb

References

� To have an overview of the seqinR's functionnality, please consult this vignette: Charif, D., Lobry, J.R. (2005) SeqinR: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis. Springer Verlag, Biological and Medical Physics/Biomedical Series, in preparation.

Examples

s = choosebank.socket("genbank")
  query.socket(s$socket,"felis","sp=felis catus et t=cds et o=mitochondrion")
  is.SeqAcnucWeb(felis$req[[1]])