seqinr (version 3.1-2)

prettyseq: Text representation of a sequence from an ACNUC server

Description

To get a text representation of sequence of rank num and of its subsequences, with bpl bases per line (default = 60), and with optional translation of protein-coding subsequences

Usage

prettyseq(num, bpl = 60, translate = TRUE, socket = autosocket())

Arguments

num

rank of the sequence in the ACNUC database

bpl

number of base per line

translate

should coding sequences be translated?

socket

an object of class sockconn connecting to a remote ACNUC database (default is a socket to the last opened database).

Value

• An invisible vector of string. The output is redirected to the console.

References

http://pbil.univ-lyon1.fr/databases/acnuc.html

citation("seqinr")

See Also

choosebank, query

Examples

### Need internet connection
  choosebank("emblTP")
  prettyseq(111)