seqinr (version 3.1-2)

where.is.this.acc: Scans databases for a given sequence accession number

Description

This function loops over all availabale ACNUC databases to look for a given sequence accession number. This is useful when you have a sequence accession number and you don't know in which database it is present.

Usage

where.is.this.acc(acc,  stopAtFirst = TRUE, ...)

Arguments

acc

An accession number as a string of characters such as "NC_001416".

stopAtFirst

Logical. If TRUE, the default, the function stops at the first database where the accession number is found.

...

Arguments passed to the function choosebank.

Value

• The function resturns invisibly a vector of strings of characters for the names of the ACNUC databases in which the accession number was found.

References

citation("seqinr")

See Also

choosebank to open a given ACNUC database.

Examples

# Need internet connection
  where.is.this.acc("NC_001416")