seqinr (version 3.4-5)

ucoweight: Weight of each synonymous codon

Description

Returns a list containing, for each of the 20 amino acids + STOP codon, the codon usage bias of each of the synonymous codon according to a given codon sequence.

Usage

ucoweight(sequence, numcode = 1)

Arguments

sequence

A nucleic acids sequence

numcode

The genetic code number as in translate

Value

a list containing, for each of the 20 amino acids and STOP codon (list tags), the weight of each synonymous codon (including the original one).

References

citation("seqinr")

See Also

synsequence

Examples

# NOT RUN {
  data(ec999)
  ucoweight(ec999[1][[1]])
# }