seqinr (version 4.2-36)

alllistranks: To get the count of existing lists and all their ranks on server

Description

This is a low level function to get the total number of list and all their ranks in an opened database.

Usage

alllistranks(socket = autosocket(), verbose = FALSE)
alr(socket = autosocket(), verbose = FALSE)

Value

A list with two components:

count

count of existing lists

rank

their rank

Arguments

socket

an object of class sockconn connecting to a remote ACNUC database (default is a socket to the last opened database).

verbose

if TRUE, verbose mode is on

Author

J.R. Lobry

Details

This low level function is usually not used directly by the user.

References

citation("seqinr")

See Also

choosebank, query

Examples

 if (FALSE) # Need internet connection
 choosebank("emblTP")
 tmp1 <- query("tmp1", "sp=Borrelia burgdorferi", virtual = TRUE)
 tmp2 <- query("tmp2", "sp=Borrelia burgdorferi", virtual = TRUE)
 tmp3 <- query("tmp3", "sp=Borrelia burgdorferi", virtual = TRUE)
 (result <- alllistranks())
 stopifnot(result$count == 3)   # Three ACNUC lists
 stopifnot(result$ranks == 2:4) # Starting at rank 2
 #
 # Summay of current lists defined on the ACNUC server:
 #
 sapply(result$ranks, getliststate)
 closebank()