seqinr (version 4.2-36)

prettyseq: Text representation of a sequence from an ACNUC server

Description

To get a text representation of sequence of rank num and of its subsequences, with bpl bases per line (default = 60), and with optional translation of protein-coding subsequences

Usage

prettyseq(num, bpl = 60, translate = TRUE, socket = autosocket())

Value

An invisible vector of string. The output is redirected to the console.

Arguments

num

rank of the sequence in the ACNUC database

bpl

number of base per line

translate

should coding sequences be translated?

socket

an object of class sockconn connecting to a remote ACNUC database (default is a socket to the last opened database).

Author

J.R. Lobry

References

https://doua.prabi.fr/databases/acnuc.html

citation("seqinr")

See Also

choosebank, query

Examples

if (FALSE) {
  ### Need internet connection
  choosebank("emblTP")
  prettyseq(111)
  }