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seqmagick (version 0.1.7)

Sequence Manipulation Utilities

Description

Supports reading and writing sequences for different formats (currently interleaved and sequential formats for 'FASTA' and 'PHYLIP'), file conversion, and manipulation (e.g. filter sequences that contain specify pattern, export consensus sequence from an alignment).

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Install

install.packages('seqmagick')

Monthly Downloads

826

Version

0.1.7

License

Artistic-2.0

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Maintainer

Last Published

January 9th, 2024

Functions in seqmagick (0.1.7)

fas2phy

fas2phy
fa_filter

fa_filter
seqlen

seqlen
fa_rename

fa_rename
fa_to_interleaved

fa_to_interleaved
bs_rename

bs_rename
bs_hamming

bs_hamming
consensus

consensus
fa_combine

fa_combine
bam2DNAStringSet2

bam2DNAStringSet2
bs_aln

bs_aln
bam2DNAStringSet

bam2DNAStringSet
download_genbank

download_genbank
bs_filter

bs_filter
phy2fas

phy2fas
mega_read

read sequence alignment file
get_id

get_id
gb_read

gb_read
fa_write

fa_write
phy_write

phy_write
phy_read

phy_read
renameTXT

renameTXT
replaceInside

replaceInside