bam2DNAStringSet2

convert bam file to aligned fasta file

Supports reading and writing sequences for different formats (currently interleaved and sequential formats for 'FASTA' and 'PHYLIP'), file conversion, and manipulation (e.g. filter sequences that contain specify pattern, export consensus sequence from an alignment).

Guangchuang Yu

seqmagick

Sequence Manipulation Utilities

bam2DNAStringSet2 function

<dl><dt>bamfile</dt>
<dd>bam file</dd>
<dt>refseq</dt>
<dd>refseq, DNAStringSet object</dd></dl>

Arguments

Author

bam2DNAStringSet2 — bam2DNAStringSet2

<dl>

<dt>bamfile</dt>
<dd>bam file</dd>


<dt>refseq</dt>
<dd>refseq, DNAStringSet object</dd>

</dl>

bam2DNAStringSet2: bam2DNAStringSet2

Description

Usage

Value

Arguments

Author