bs_rename

Supports reading and writing sequences for different formats (currently interleaved and sequential formats for 'FASTA' and 'PHYLIP'), file conversion, and manipulation (e.g. filter sequences that contain specify pattern, export consensus sequence from an alignment).

Guangchuang Yu

seqmagick

Sequence Manipulation Utilities

bs_rename function

<dl><dt>x</dt>
<dd>BStringSet object</dd>
<dt>mapping</dt>
<dd>two column data.frame</dd>
<dt>position</dt>
<dd>rename token at specific position</dd>
<dt>sep</dt>
<dd>sepator to divide token</dd>
<dt>mode</dt>
<dd>one of 'replace', 'prefix' or 'suffix'</dd></dl>

Arguments

Author

bs_rename — bs_rename

<dl>

<dt>x</dt>
<dd>BStringSet object</dd>


<dt>mapping</dt>
<dd>two column data.frame</dd>


<dt>position</dt>
<dd>rename token at specific position</dd>


<dt>sep</dt>
<dd>sepator to divide token</dd>


<dt>mode</dt>
<dd>one of 'replace', 'prefix' or 'suffix'</dd>

</dl>

bs_rename: bs_rename

Description

Usage

Value

Arguments

Author