seqmagick (version 0.1.7)

mega_read: read sequence alignment file

Description

read sequence alignment file

Usage

mega_read(file)
fa_read(file, type = "auto")
clw_read(file, type = "auto")
sth_read(file, type = "auto")

Value

BStringSet object

Arguments

file

multiple sequence file

type

one of 'DNA', 'RNA', 'AA', 'Protein', 'unknown' or 'auto'

Author

Guangchuang Yu

Examples

fa_file <- system.file("extdata/HA.fas", package="seqmagick")
fa_read(fa_file)

mega_file <- system.file("extdata/mega/Crab_rRNA.meg", package="seqmagick")
mega_read(mega_file)