CheckLH

Check that the provided LifeHistData is in the correct format.

internal

Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.

Jisca Huisman

sequoia

Pedigree Inference from SNPs

CheckLH function

<dl><dt>LifeHistData</dt>
<dd>the dataframe with ID - Sex - Birth year, and optionally
BY.min - BY.max - YearLast.</dd>
<dt>gID</dt>
<dd>character vector with names of genotyped individuals, i.e.
rownames(GenoM).</dd>
<dt>sorted</dt>
<dd>logical, return lifehistdata for genotyped individuals only,
in strictly the same order. Will including padding with 'empty' rows if an
individual in gID was not in the input-LH.</dd>
<dt>returnDups</dt>
<dd>logical, instead of just the (sorted) LifeHistData, return
a list that also includes a dataframe with duplicate entries and/or a
character vector with genotyped IDs not occuring in LifeHistData (as
formerly returned by <code>DuplicateCheck</code>).</dd></dl>

Arguments

Check LifeHistData — CheckLH

<dl>

<dt>LifeHistData</dt>
<dd>the dataframe with ID - Sex - Birth year, and optionally
BY.min - BY.max - YearLast.</dd>


<dt>gID</dt>
<dd>character vector with names of genotyped individuals, i.e.
rownames(GenoM).</dd>


<dt>sorted</dt>
<dd>logical, return lifehistdata for genotyped individuals only,
in strictly the same order. Will including padding with 'empty' rows if an
individual in gID was not in the input-LH.</dd>


<dt>returnDups</dt>
<dd>logical, instead of just the (sorted) LifeHistData, return
a list that also includes a dataframe with duplicate entries and/or a
character vector with genotyped IDs not occuring in LifeHistData (as
formerly returned by <code>DuplicateCheck</code>).</dd>

</dl>

CheckLH: Check LifeHistData

Description

Usage

Value

Arguments