FortifyPairs

Convert dataframe <code>Pairs</code> into a list of integer vectors.
 Called only by <code>CalcPairLL</code>.

internal

Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.

Jisca Huisman

sequoia

Pedigree Inference from SNPs

FortifyPairs function

<dl><dt>Pairs</dt>
<dd>dataframe with columns ID1 - ID2 - Sex1 - Sex2 - AgeDif - focal
- k.</dd>
<dt>gID</dt>
<dd>character vector with IDs of genotyped individuals.</dd>
<dt>Renamed</dt>
<dd>length-2 list (dams, sires) each with a 2-column dataframe.
matching character IDs to negative numbers, for dummified individuals.
Element of the list returned by <code>PedToNum</code>.</dd>
<dt>LH</dt>
<dd>lifehistory dataframe, ID - Sex - BirthYear.</dd></dl>

Arguments

Make Pairs Fortran Compatible — FortifyPairs

<dl>

<dt>Pairs</dt>
<dd>dataframe with columns ID1 - ID2 - Sex1 - Sex2 - AgeDif - focal
- k.</dd>


<dt>gID</dt>
<dd>character vector with IDs of genotyped individuals.</dd>


<dt>Renamed</dt>
<dd>length-2 list (dams, sires) each with a 2-column dataframe.
matching character IDs to negative numbers, for dummified individuals.
Element of the list returned by <code>PedToNum</code>.</dd>


<dt>LH</dt>
<dd>lifehistory dataframe, ID - Sex - BirthYear.</dd>

</dl>

FortifyPairs: Make Pairs Fortran Compatible

Description

Usage

Value

Arguments