GetDummifiable

Get the dummifiable individuals, using various possible
 criteria

internal

Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.

Jisca Huisman

sequoia

Pedigree Inference from SNPs

GetDummifiable function

<dl><dt>Pedigree</dt>
<dd>dataframe with id - dam - sire.</dd>
<dt>gID</dt>
<dd>vector with IDs of SNP-genotyped individuals.</dd>
<dt>minSibSize</dt>
<dd>minimum requirements to be considered dummifiable:<ul>
<li>'1sib' : sibship of size 1, with or without grandparents. The
 latter aren't really a sibship, but can be useful in some situations.</li>
<li>'1sib1GP': sibship of size 1 with at least 1 grandparent</li>
<li>'2sib': at least 2 siblings, with or without grandparents. Used
 by <code>PedCompare</code></li>
</ul>.</dd></dl>

Arguments

Dummifiable IDs — GetDummifiable

<dl>

<dt>Pedigree</dt>
<dd>dataframe with id - dam - sire.</dd>


<dt>gID</dt>
<dd>vector with IDs of SNP-genotyped individuals.</dd>


<dt>minSibSize</dt>
<dd>minimum requirements to be considered dummifiable:<ul>
<li>'1sib' : sibship of size 1, with or without grandparents. The
 latter aren't really a sibship, but can be useful in some situations.</li>
<li>'1sib1GP': sibship of size 1 with at least 1 grandparent</li>
<li>'2sib': at least 2 siblings, with or without grandparents. Used
 by <code>PedCompare</code></li>
</ul>.</dd>

</dl>

GetDummifiable: Dummifiable IDs

Description

Usage

Value

Arguments

Details