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sequoia (version 2.11.1)

MkFortParams: PARAM to FortPARAM

Description

Convert list PARAM into a list with integer-only and double-only vectors, to be passed to Fortran.

Usage

MkFortParams(PARAM, fun = "main")

Value

A list with elements

Ng

Integer, number of individuals

SpecsInt

8 integers:

  • nSnp

  • MaxMismatchV; DUP - OH - ME

  • MaxSibshipSize

  • Complx, 0=mono, 1=simp, 2=full

  • quiet, -1=verbose, 0=FALSE, 1=TRUE

  • nAgeCl, nrow(AgePriors)

SpecsDbl

2 double precision numbers:

  • Tfilter (< 0)

  • Tassign (> 0)

ErrM

double, 3x3 matrix passed as length-9 vector

SpecsIntMkPed

fun='main' only

  • MaxSibIter

  • AgeEffect, 0=no, 1=yes, 2=extra

  • CalcLLR, 0=FALSE, 1=TRUE

  • Herm, 0=no, 1= dam/sire distinction, 2=no dam/sire distinction

SpecsIntAmb

fun='mayberel' only

  • ParSib 1=par, 2=ped

  • nAmbMax

Arguments

PARAM

list with input parameters.

fun

function from which MkFortParams is called, determines which elements are included in the output list.