PlotAgePrior

Visualise the age-difference based prior probability ratios as a
 heatmap.

Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.

Jisca Huisman

sequoia

Pedigree Inference from SNPs

PlotAgePrior function

<dl><dt>AP</dt>
<dd>matrix with age priors (\(P(A|R)/P(A)\)) with age differences in
rows and relationships in columns; by default M: maternal parent (mother),
P: paternal parent (father), FS: full siblings, MS: maternal siblings (full
+ half), PS: paternal siblings.</dd>
<dt>legend</dt>
<dd>if <code>TRUE</code>, a new plotting window is started and
<code><a href="/link/layout?package=sequoia&version=2.11.1" data-mini-rdoc="sequoia::layout">layout</a></code> is used to plot a legend next to the main plot. Set to
<code>FALSE</code> if you want to add it as panel to an existing plot (e.g. with
<code>par(mfcol=c(2,2))</code>).</dd></dl>

Arguments

Plot Age Priors — PlotAgePrior

<dl>

<dt>AP</dt>
<dd>matrix with age priors (\(P(A|R)/P(A)\)) with age differences in
rows and relationships in columns; by default M: maternal parent (mother),
P: paternal parent (father), FS: full siblings, MS: maternal siblings (full
+ half), PS: paternal siblings.</dd>


<dt>legend</dt>
<dd>if <code>TRUE</code>, a new plotting window is started and
<code><a href='https://rdrr.io/r/graphics/layout.html'>layout</a></code> is used to plot a legend next to the main plot. Set to
<code>FALSE</code> if you want to add it as panel to an existing plot (e.g. with
<code>par(mfcol=c(2,2))</code>).</dd>

</dl>

PlotAgePrior: Plot Age Priors

Description

Usage

Value

Arguments

See Also

Examples