PlotSeqSum

visualise the numbers of assigned parents, sibship sizes, and
 parental LLRs

Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.

Jisca Huisman

sequoia

Pedigree Inference from SNPs

PlotSeqSum function

<dl><dt>SeqSum</dt>
<dd>list output from <code>SummarySeq</code>.</dd>
<dt>Pedigree</dt>
<dd>dataframe with at least id, dam and sire in columns 1-3,
respectively. If columns with parental LLRs and/or Mendelian errors are
present, these will be plotted as well.</dd>
<dt>Panels</dt>
<dd>character vector with panel(s) to plot. Choose from 'all',
'G.parents' (parents of genotyped individuals), 'D.parents' (parents of
dummies), 'O.parents' (parents of non-genotyped non-dummies), sibships',
'LLR', 'OH'.</dd>
<dt>ask</dt>
<dd>ask for user key stroke before proceeding to next plot.</dd></dl>

Arguments

Plot Summary Overview of sequoia Output — PlotSeqSum

<dl>

<dt>SeqSum</dt>
<dd>list output from <code>SummarySeq</code>.</dd>


<dt>Pedigree</dt>
<dd>dataframe with at least id, dam and sire in columns 1-3,
respectively. If columns with parental LLRs and/or Mendelian errors are
present, these will be plotted as well.</dd>


<dt>Panels</dt>
<dd>character vector with panel(s) to plot. Choose from 'all',
'G.parents' (parents of genotyped individuals), 'D.parents' (parents of
dummies), 'O.parents' (parents of non-genotyped non-dummies), sibships',
'LLR', 'OH'.</dd>


<dt>ask</dt>
<dd>ask for user key stroke before proceeding to next plot.</dd>

</dl>

PlotSeqSum: Plot Summary Overview of sequoia Output

Description

Usage

Arguments

Examples