Call main Fortran part of sequoia, and convert its output to a list with dataframes.
SeqParSib(
ParSib,
FortPARAM,
GenoM,
LhIN,
AgePriors,
Parents,
mtDif,
DumPfx,
quiet
)A list with
the pedigree
Info on dummies (not included if parentage-only)
Total log-likelihood per iteration
Ageprior including columns for grandparental and avuncular relationships
Includes sex and birthyear estimate inferred from the pedigree for individuals with initially unknown sex and/or birthyear
.
For a detailed description of the output see sequoia.
either "par" to call parentage assignment, or "sib" to call the rest of the algorithm.
a named vector with parameter values, as generated by
ParamToSpecs.
matrix with genotype data, size nInd x nSnp.
life history data: ID - sex - birth year.
matrix with agepriors, size `FortPARAM["nAgeClasses"]` by 8.
matrix with rownumbers of assigned parents, size nInd by 2.
matrix indicating whether individuals have definitely a different mitochondrial haplotype (1), or (possibly) the same (0). Size nInd x nInd.
dummy prefixes
suppress messages.