orderLH

Order lifehistory data to match order of IDs in genotype data,
 filling in gaps with missing values.

internal

Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.

Jisca Huisman

sequoia

Pedigree Inference from SNPs

orderLH function

<dl><dt>LH</dt>
<dd>dataframe with lifehistory information:<dl>
 <dt>ID</dt>
<dd>max. 30 characters long,</dd></dl></dd> <dt>Sex</dt>
<dd>1 = females, 2 = males, other numbers = unknown,</dd> <dt>Birth Year</dt>
<dd>(or hatching year) Use negative numbers to denote
 missing values.</dd> <dt>BY.min</dt>
<dd>minimum birth year (optional)</dd> <dt>BY.max</dt>
<dd>maximum birth year (optional)</dd></dl>
<dt>gID</dt>
<dd>character vector with IDs in genotype data, in order of
occurrence.</dd>

Arguments

Order Lifehistory Data — orderLH

<dl>

<dt>LH</dt>
<dd>dataframe with lifehistory information:<dl>
 <dt>ID</dt>
<dd>max. 30 characters long,</dd>

 <dt>Sex</dt>
<dd>1 = females, 2 = males, other numbers = unknown,</dd>

 <dt>Birth Year</dt>
<dd>(or hatching year) Use negative numbers to denote
 missing values.</dd>

 <dt>BY.min</dt>
<dd>minimum birth year (optional)</dd>

 <dt>BY.max</dt>
<dd>maximum birth year (optional)</dd>

</dl></dd>


<dt>gID</dt>
<dd>character vector with IDs in genotype data, in order of
occurrence.</dd>

</dl>

orderLH: Order Lifehistory Data

Description

Usage

Value

Arguments