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seriation (version 1.2-0)

Infrastructure for Ordering Objects Using Seriation

Description

Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT).

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Version

Install

install.packages('seriation')

Monthly Downloads

32,732

Version

1.2-0

License

GPL-3

Maintainer

Michael Hahsler

Last Published

February 22nd, 2016

Functions in seriation (1.2-0)

VAT

Visual Analysis for Cluster Tendency Assessment (VAT/iVAT)
Townships

Bertin's Characteristics of Townships
Munsingen

Hodson's Munsingen Data Set
Irish

Irish Referendum Data Set
dissplot

Dissimilarity Plot
pimage

Permutation Image Plot
permute

Permute the Order in Various Objects
seriate

Seriate Dissimilarity Matrices, Matrices or Arrays
register_DendSer

Register Seriation Methods from Package DendSer
color_palettes

Different Useful Color Palettes
register_GA

Register a Genetic Algorithm Seriation Method
bertinplot

Plot a Bertin Matrix
permutation

Class ser_permutation -- A Collection of Permutation Vectors for Seriation
criterion

Criterion for a Loss/Merit Function for Data Given a Permutation
criterion_methods

Registry for Criterion Methods
reorder.hclust

Reorder Dendrograms using Optimal Leaf Ordering
Zoo

Zoo Data Set
get_order

Extracting Order Information from a Permutation Object
Psych24

Results of 24 Psychological Test for 8th Grade Students
hmap

Plot Heat Map Reordered Using Seriation
permutation_matrix

Conversion Between Permutation Vector and Permutation Matrix
Wood

Gene Expression Data for Wood Formation in Poplar Trees
seriation_methods

Registry for Seriation Methods
permutation_vector

Class ser_permutation_vector -- A Single Permutation Vector for Seriation
dissimilarity

Dissimilarities and Correlations Between Seriation Orders
Robinson

Create and Recognize Robinson and Pre-Robinson Matrices
seriation_data

Create Simulated Data for Seriation Evaluation
Chameleon

2D Data Sets used for the CHAMELEON Clustering Algorithm