Usage
plotFindArguments(onlyTab = FALSE, logit = TRUE, pos.legend = NULL, legend.cex = 0.8, col = NULL, main = NULL, xlab = NULL, ylab = NULL, only.a0 = FALSE, lty = 1, lwd = 1, y.intersp = 1.1)
Arguments
onlyTab
if TRUE, then this plot is not generated and only the
table of the number of differentially expressed genes and the estimated FDR
for the different values of the fudge factor is shown.
logit
should the posterior probabilities be logit-transformed before
they are plotted?
pos.legend
an integer between 0 and 4. See help.finda0(plot)
for how pos.legend can be specified, and for its default.
legend.cex
the size of the text in the legend relative to the default size
col
a vector specifying the colors of the lines for the different values
of the fudge factor. For a description of how colors can be specified, see
par. main
a character string naming the main title of the plot.
xlab
a character string naming the label of the x axis.
ylab
a character string naming the label of the y axis.
only.a0
if TRUE, only the values of $a0$ are shown in the
legend. If FALSE, both the values of $a0$ and the corresponding
number of differentially expressed genes are shown.
lty
a value or vector specifying the line type of the curves. For details,
see par. lwd
a numeric value specifying the width of the plotted lines. For details,
see par. y.intersp
a numeric value specifying the space between the rows of the legend.