adjust.for.mt

build.dperm

d.null

pairt.cl.transform

pairt.samp

pairt.samp.transform

Rfold.cal

setup.mat.samp

stats.cal

quantiles

add.target2href

check.chipname

col2hex

getTD4Affy

make.tablecode

pretty.mat.fdr

formatSAM

pretty.mat.sig

compPermStat

cat.null

cat.null.approx

chisqClass

computeContCols

checkA0

checkFUNout

checkQuantiles

compFailure

compFailureMat2

compFailureSubset

compFalse

compNumber

compRatio

computeRS

ebamA0

getFailure

getSuccesses

makeA0mat

pi0.est2

pi0.est3

truncZ

finda02html

cat.null.approx2

na.handling

na.replace.cont

getQuantiles

recodeVal

recodeLevel

getTD4rs

findFDR

findNumber

checkInitialDelta

chisqClassSplitted

internal

siggenes-internal

Identification of differentially expressed genes and
estimation of the False Discovery Rate (FDR) using both the
Significance Analysis of Microarrays (SAM) and the Empirical
Bayes Analyses of Microarrays (EBAM).

siggenes-internal: Internal siggenes functions

Description

Arguments

Details