Usage
sam2excel(object, delta, file, excel.version=1, n.digits = 3, what = "both", entrez = FALSE, chip = "", quote = FALSE) ebam2excel(object, delta, file, excel.version=1, n.digits = 4, what = "both", entrez = FALSE, chip = "", quote = FALSE)
Arguments
object
either a SAM or an EBAM object.
delta
a numerical value specifying the Delta value.
file
character string naming the file in which the output should be
stored. Must have the suffix ".csv".
excel.version
either 1 or 2. If excel.version=1 (default) a csv file
for the use in an Excel version with American standard settings (sep="," and
dec=".") will be generated. If excel.version=2 a csv file for the European
standard setting (sep=";" and dec=",") will be generated.
n.digits
integer specifying the number of decimal places used in the output.
what
either "both", "stats" or "genes". If "stats" general
information will be shown. If "genes" gene-specific information will be given.
If "both" both general and gene-specific information will be shown.
entrez
logical indicating if both the Entrez links and the symbols of the genes will be added
to the output.
chip
character string naming the chip type used in this analysis. Must
be specified as in the meta-data section of Bioconductor (e.g., "hgu133a"
for the Affymetrix HG-U133A chip). Only needed if ll = TRUE.
If the argument data in sam(data, cl, ...) has been specified
by an ExpressionSet object chip need not to be specified.
quote
logical indicating if character strings and factors should be surrounded by
double quotes. For details see write.table.