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SIMoNe: Statistical Inference for Modular Networks

The goals of SIMoNe is to implement methods for the inference of co-expression networks based on partial correlation coefficients from either steady-state or time-course transcriptomic data. Note that with both type of data this package can deal with samples collected in different experimental conditions and therefore not identically distributed. In this particular case, multiple but related networks are inferred on one simone run.

devtools::install_github("jchiquet/simone")

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Install

install.packages('simone')

Monthly Downloads

103

Version

1.0-4

License

GPL (>= 2)

Maintainer

Last Published

February 3rd, 2019

Functions in simone (1.0-4)

simone

SIMoNe algorithm for network inference
simone-package

Statistical Inference for MOdular NEtworks (SIMoNe)
simone-internal

'simone' internal functions
cancer

Microarray data set for breast cancer
rTranscriptData

Simulation of artificial transcriptomic data
plot.simone

Graphical representation of SIMoNe outputs
coNetwork

Random perturbations of a reference network
rNetwork

Simulation of (clustered) Gaussian networks
getNetwork

Network extraction from a SIMoNe run
plot.simone.network

Graphical representation of a network
setOptions

Low-level options of a SIMoNe run