sleuth (version 0.29.0)

sleuth_to_matrix: Convert a sleuth object to matrix

Description

Convert a sleuth object to a matrix with the condition names.

Usage

sleuth_to_matrix(obj, which_df, which_units)

Arguments

obj

a sleuth object

which_df

character vector of length one. Which type of data to use ("obs_norm" or "obs_raw")

which_units

character vector of length one. Which units to use ("tpm" or "est_counts")

Value

a list with an attribute 'data', which contains a matrix of target_ids and transcript expression in which_units

Examples

# NOT RUN {
sleuth_matrix <- sleuth_to_matrix(sleuth_obj, 'obs_norm', 'tpm')
head(sleuth_matrix$data) # look at first 5 transcripts, sorted by name
# }