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sleuth (version 0.30.0)

plot_sample_density: Plot sample density

Description

Plot the density of one particular sample

Usage

plot_sample_density(obj, which_sample = obj$sample_to_covariates$sample[1],
  use_filtered = TRUE, units = "est_counts", trans = "log", offset = 1)

Arguments

obj

a sleuth object

which_sample

a character string matching a sample in obj$sample_to_covariates

use_filtered

if TRUE, use filtered data. Otherwise use all data

units

either 'est_counts' ('scaled_reads_per_base' for gene_mode) or 'tpm'

trans

a string pointing to a function to use for the transformation.

offset

the offset so that transformations such as log don't compute -Inf. If NULL, then will not add an offset

Value

a ggplot2 object