Plot sample heatmap using the Jensen-Shannon divergence
plot_sample_heatmap(obj, use_filtered = TRUE, color_high = "white",
color_low = "dodgerblue", x_axis_angle = 50,
annotation_cols = setdiff(colnames(obj$sample_to_covariates), "sample"),
cluster_bool = TRUE, ...)a sleuth object
if TRUE, use filtered data. otherwise, use everything
the 'high' color (to label samples that are close)
the 'low' color (to label samples that are far apart)
the angle at which to put the x-axis labels
a character vector of covariates from
sample_to_covariates that should be annotated on the heatmap
whether the rows and columns should be hierarchically
clustered. default is TRUE
additional arguments to customize the heatmap. passed to
pheatmap. See ?pheatmap for documentation on additional options.
a ggplot2 object