slingshot (version 2.1.1)

slingCurves: Extract simultaneous principal curves

Description

Extract the simultaneous principal curves from an object containing slingshot output.

Usage

slingCurves(x, ...)
# S4 method for PseudotimeOrdering
slingCurves(x, as.df = FALSE)
# S4 method for SingleCellExperiment
slingCurves(x, ...)
# S4 method for SlingshotDataSet
slingCurves(x, as.df = FALSE)

Arguments

x

an object containing slingshot output.

...

additional parameters to be passed to object-specific methods.

as.df

logical, whether to format the output as a data.frame, suitable for plotting with ggplot.

Value

A list of smooth lineage curves, each of which is a principal_curve object.

Examples

# NOT RUN {
data("slingshotExample")
rd <- slingshotExample$rd
cl <- slingshotExample$cl
pto <- slingshot(rd, cl, start.clus = '1')
slingCurves(pto)
# }