Viterbi.four: A scaled Viterbi algorithm for allocating clones to one of four underlying states.
Description
A work horse of the fit.model function. It uses a scaled version of the Viterbi algorithm to allocate clones to one of four underlying states as fitted
using a heterogeneous HMM.
Usage
Viterbi.four(y, BFGS.output, BFGS.trans.mat)
Arguments
y
the data to be allocated to states
BFGS.output
The output obtained from the find.param.four function
BFGS.trans.mat
A list of the heterogeneous transition matrices
Value
A vector of numbers indicating to which state clones are allocated to.