Viterbi.three: A scaled Viterbi algorithm for allocating clones to one of two underlying states.
Description
A work horse of the fit.model function. It uses a scaled version of the Viterbi algorithm to allocate clones to one of three underlying states as fitted
using a heterogeneous HMM.
Usage
Viterbi.three(y, BFGS.output, BFGS.trans)
Arguments
y
the data to be allocated to states
BFGS.output
The output obtained from the find.param.three function
BFGS.trans
A list of the heterogeneous transition matrices
Value
A vector of numbers indicating to which state clones are allocated to.