find.param.five

 output of the optimisation with 5 underlying states

output.optim

Logical variable - TRUE if you want to fix the variance to be the same across states

var.fixed


  This function is a workhorse of the process.data function. It outputs state means/variances and transitions matrices in the model with five states.


 misc 

Methods for segmenting, normalising and processing aCGH
data; including plotting functions for visualising raw and
segmented data for individual and multiple arrays.

John Marioni

snapCGH

Segmentation, normalisation and processing of aCGH data.

find.param.five function

output of the optimisation with 5 underlying states

This function is a workhorse of the process.data function. It outputs state means/variances and transitions matrices in the model with five states.

find.param.five: Yields the output in a model with five underlying states

Description

Usage

Arguments

Value