runTilingArray

An object of class <code><a rd-options="limma:malist" href="/link/MAList?package=snapCGH&version=1.42.0&to=limma%3Amalist" data-mini-rdoc="limma:malist::MAList">MAList</a></code> or
    <code><a rd-options="snapCGH:SegList" href="/link/SegList?package=snapCGH&version=1.42.0&to=snapCGH%3ASegList" data-mini-rdoc="snapCGH:SegList::SegList">SegList</a></code>

input

integer of length 1, maximum number of segments (= 1 +
    maximum number of change points)

maxSeg

integer of length 1, maximum length of a single segment

maxk

Criteria for model selection.  Options are "none",
    "AIC" and "BIC" (default)

criteria


  Wrapper calling the Tiling Array segmentation algorithm on an MAList
  object.  This function requires the library <code>DNAcopy</code> to be loaded.


methods

Methods for segmenting, normalising and processing aCGH
data; including plotting functions for visualising raw and
segmented data for individual and multiple arrays.

John Marioni

snapCGH

Segmentation, normalisation and processing of aCGH data.

runTilingArray function

An object of class <code><a href="MAList" rd-options="limma:malist">MAList</a></code> or
    <code><a href="SegList" rd-options="snapCGH:SegList">SegList</a></code>

integer of length 1, maximum number of segments (= 1 +
    maximum number of change points)

Criteria for model selection.  Options are "none",
    "AIC" and "BIC" (default)

Wrapper calling the Tiling Array segmentation algorithm on an MAList
  object.  This function requires the library <code>DNAcopy</code> to be loaded.

runTilingArray: Results of segmenting an MAList data object using the Picard et al algorithm found in the tilingArray library

Description

Usage

Arguments

Value

See Also