snp.lhs.tests
and snp.rhs.tests
. The class
"GlmTestsScore"
extends the class
"GlmTests"
and is invoked by setting the argument
score=TRUE
when calling testing functions
in order to save the scores and their variances
(and covariances)
"GlmTests"
have four slots:
"GlmTestsScore"
class extends this, adding a slot
score
containing a list with elements which are themselves
lists with two elements:
U
, stored as a vectorsignature(x = "GlmTests", i = "ANY", j =
"missing", drop = "missing")
: Subsetting operatorsignature(from = "GlmTests", to = "data.frame")
:
Simplify objectsignature(x = "GlmTests", df =
"missing")
: Extract chi-squared test valuessignature(x = "GlmTests")
: Extract
degrees of freedom for testssignature(x="GlmTests")
: Extract (or generate)
a name for each testsignature(x = "GlmTests", df =
"missing")
: Extract p-valuessignature(object = "GlmTests")
:
Extract sample sizes for testssignature(object = "GlmTests")
: Show methodsignature(object = "GlmTests")
: Summary
methodsignature(x = "GlmTestsScore", i = "ANY", j =
"missing", drop = "missing")
: Subsetting operatorsignature(x = "GlmTestsScore", simplify =
"logical")
: Extract signs of associations. If simpify
is
TRUE
then a simple vector is returned if all tests are on 1dfsignature(x = "GlmTestsScore", y =
"GlmTestsScore", score = "logical")
: Combine results from two
sets of testssignature(x = "GlmTestsScore", snps =
"character")
: Emulate, in the score vector and its (co)variances,
the effect of switching of the alleles of specified SNPssnp.lhs.tests
,snp.rhs.tests
,
SingleSnpTests
,
SingleSnpTestsScore