families

genotypes

pedData


  These data started life as real data derived from an affected sibling
  pair study of type 1 diabetes. However, original subject and SNP
  identidiers have been replaced by randomly chosen ones.


datasets

Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

David Clayton

snpStats

SnpMatrix and XSnpMatrix classes and methods

families function

There are two objects in the loaded data file:
  <ul>
<li> <code>genotypes</code>: An object of class
    <code>"<a rd-options="=SnpMatrix-class" href="/link/snp.matrix?package=snpStats&version=1.22.0&to=%3DSnpMatrix-class" data-mini-rdoc="=SnpMatrix-class::snp.matrix">snp.matrix</a>"</code> containing the SNP
    genotype data for both parents and affected offspring
    </li>
<li> <code>pedData</code>: A data frame containing the standard six fields
    for a <em>LINKAGE</em> pedfile. The are named <code>familyid</code>,
    <code>member</code>, <code>father</code>, <code>mother</code> <code>sex</code>, and
    <code>affected</code>
  </li>
</ul> The two objects are linked by common row names.

Format

These data started life as real data derived from an affected sibling
  pair study of type 1 diabetes. However, original subject and SNP
  identidiers have been replaced by randomly chosen ones.

families: Test data for family association tests

Description

Usage

Arguments

Format

Details

Examples