pp:
Unpack posterior probabilities from one-byte codes
Description
In snpStats, the three "posterior" probabilities corresponding to
the possible values of an uncertain genotype are packed into a single
byte code (with, of course, some loss in accuracy). This function, which
is provided as an aid to writing new functions, unpacks the posterior
probabilities from the single byte codes.
Usage
pp(x, transpose = FALSE)
Arguments
x
A vector, length N, which can be coerced into type raw
transpose
If FALSE, the result is an Nx3 matrix of posterior
probabilities. If TRUE, a 3xN matrix is returned.
#### Read imputed data from a file produced by MACH ##path <- system.file("extdata/mach1.out.mlprob.gz", package="snpStats")
mach <- read.mach(path)
pp(mach[1:50, 10])