write.SnpMatrix

file

If <code>TRUE</code>, write each genotype as two alleles

as.alleles

If <code>TRUE</code>, the output is appended to the designated
  file. Otherwise a new file is opened

append

If <code>TRUE</code>, row and column names will be enclosed in quotes

quote

The string separating entries within a line

If <code>TRUE</code>, each row will commence with the row name

row.names

If <code>TRUE</code>, the first line will contain all the
    column names

col.names


  This function is closely modelled on <code>write.table</code>. It writes an
  object of class <code>SnpMatrix</code> as a text file with one line for
  each row of the matrix. Genotpyes are written in numerical form,
  <em>i.e.</em> as 0, 1 or 2 (where 1 denotes heterozygous) or,
  optionally, as a pair of alleles (each coded 1 or 2).


manip

utilities

Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

David Clayton

snpStats

SnpMatrix and XSnpMatrix classes and methods

write.SnpMatrix function

This function is closely modelled on <code>write.table</code>. It writes an
  object of class <code>SnpMatrix</code> as a text file with one line for
  each row of the matrix. Genotpyes are written in numerical form,
  <em>i.e.</em> as 0, 1 or 2 (where 1 denotes heterozygous) or,
  optionally, as a pair of alleles (each coded 1 or 2).

write.SnpMatrix: Write a SnpMatrix object as a text file

Description

Usage

Arguments

Value

See Also