snpStatsWriter (version 1.5-6)

write.snphap: Write SNPHAP files

Description

Simple wrapper to write.simple to write files in SNPHAP format

Usage

write.snphap(X, a1 = NULL, a2 = NULL, file)

Arguments

X

SnpMatrix object

a1

vector of first allele at each SNP

a2

vector of second allele at each SNP

file

Output file name.

Value

No return value, but has the side effect of writing specified output file.

Details

If not allele codes are given, a1 and a2 will be set to 1 and 2 for all SNPs

Examples

data(testdata,package="snpStats")
A.small <- Autosomes[1:6,1:10]
f <- tempfile()
## write in suitable format for snphap
write.snphap(A.small, file=f)
unlink(f)