sommer (version 2.9)

g: g functionality

Description

This function allows mmer2 to recognize the use of a variance-covariance structure for a random effect.

Usage

g(x)

Arguments

x

random effect with variance-covariance structure to add

Value

$x

returns the random effect and mmer2 can include the G matrix.

References

Covarrubias-Pazaran G (2016) Genome assisted prediction of quantitative traits using the R package sommer. PLoS ONE 11(6): doi:10.1371/journal.pone.0156744

See Also

The core functions of the package mmer and mmer2

Examples

# NOT RUN {
  
#### call the data
data(CPdata)
CPpheno <- CPdata$pheno
CPgeno <- CPdata$geno
#### create the variance-covariance matrix 
A <- A.mat(CPgeno)
#### look at the data and fit the model
head(CPpheno)
mix1 <- mmer2(Yield~1,random=~g(id), G=list(id=A), data=CPpheno)
summary(mix1)

# }