sommer (version 4.1.4)

DT_expdesigns: Data for different experimental designs

Description

The following data is a list containing data frames for different type of experimental designs relevant in plant breeding:

1) Augmented designs (2 examples)

2) Incomplete block designs (1 example)

3) Split plot design (2 examples)

4) Latin square designs (1 example)

5) North Carolina designs I,II and III

How to fit each is shown at the Examples section. This may help you get introduced to experimental designs relevant to plant breeding. Good luck.

Format

Different based on the design.

References

Covarrubias-Pazaran G (2016) Genome assisted prediction of quantitative traits using the R package sommer. PLoS ONE 11(6): doi:10.1371/journal.pone.0156744

Examples

# NOT RUN {
# #### =================================== ####
# #### ===== Augmented Block Design 1 ==== ####
# #### =================================== ####
# data(DT_expdesigns)
# DT <- DT_expdesigns
# names(DT)
# data1 <- DT$au1
# head(data1)
# ## response variable: "yield"
# ## check indicator: "entryc" ('nc' for all unreplicated, but personal.name for checks)
# ## blocking factor: "block"
# ## treatments, personal names for replicated and non-replicated: "trt"
# ## check no check indicator: "new"
# mix1 <- mmer(yield~entryc, 
#              random=~block+trt, 
#              rcov=~units,
#              data=data1)
# summary(mix1)
# 
# #### =================================== ####
# #### ==== North Carolina Design III ==== ####
# #### =================================== ####
# 
# data.car3 <- DT$car3
# data.car3$setrep <- paste(data.car3$set,data.car3$rep,sep=":")
# head(data.car3)
# ## response variable: "yield"
# ## male indicator: "male"
# ## female indicator: "female"
# ## replication: "rep"
# ## set of males: "set"
# mix.car3 <- mmer(yield ~ set, 
#                  random=~ male
#                          + female ,
#                  rcov=~units,
#                  data=data.car3)
# (suma <- summary(mix.car3))


# }