spaMM (version 3.2.0)

post-fit: Applying post-fit procedures on spaMM results

Description

Packages implementing post-fit procedures define helper functions that may handle a limited range of classes of fit results. This documentation topic gives further directions to apply some post-fit procedures that handle objects of class HLfit. For other procedures, spaMM results may or may not be handled correctly by default. In such cases, diagnosing a failure in a debugging session may suggest a simple solution (such as providing the coef. argument to multcomp::glht).

Details

For multiple comparison procedures by multcomp::glht, one has to explicitly give the argument coef.=fixef.HLfit (see Examples; fixef.HLfit is the spaMM method for the generic function fixef);

For DHARMa plots, see plot.HLfit;

For using RLRsim::RLRTSim(), see get_RLRTSim_args.

Examples

# NOT RUN {
if (requireNamespace("multcomp", quietly = TRUE)) {
  library(multcomp)
  set.seed(123)
  irisr <- cbind(iris,id=sample(4,replace=TRUE,size=nrow(iris)))
  irisfit <- fitme(Petal.Length~ Species +(1|id), data=irisr, family=Gamma(log))
  summary(glht(irisfit,mcp("Species" = "Tukey"), coef.=fixef.HLfit))
}
# }