spaMM.colors

<code>spaMM.colors</code> is the default color palette for some color plots in <code>spaMM</code>.

Inference based on models with or without spatially-correlated random effects, multivariate responses, or non-Gaussian random effects (e.g., Beta). Variation in residual variance (heteroscedasticity) can itself be represented by a mixed-effect model. Both classical geostatistical models (Rousset and Ferdy 2014 <doi:10.1111/ecog.00566>), and Markov random field models on irregular grids (as considered in the 'INLA' package, <https://www.r-inla.org>), can be fitted, with distinct computational procedures exploiting the sparse matrix representations for the latter case and other autoregressive models. Laplace approximations are used for likelihood or restricted likelihood. Penalized quasi-likelihood and other variants discussed in the h-likelihood literature (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>) are also implemented.

Franois Rousset

spaMM

Mixed-Effect Models, with or without Spatial Random Effects

François Rousset

Jean-Baptiste Ferdy

Alexandre Courtiol

spaMM.colors function

<dl> <dt>n</dt>
<dd>Number of color levels returned by the function. A calling graphic function with argument <code>nlevels</code> will typically 
 take the first (i.e., bluest) <code>nlevels</code> color levels. If <code>n</code>&lt;<code>nlevels</code>, the color levels are recycled</dd> <dt>redshift</dt>
<dd>The higher it is, the more the palette blushes....</dd> <dt>adjustcolor_args</dt>
<dd>Either NULL or a list of arguments for <code><a href="/link/adjustcolor?package=spaMM&version=4.5.0" data-mini-rdoc="spaMM::adjustcolor">adjustcolor</a></code>, in which case <code>adjustcolor</code> is called to modify <code>spaMM.colors</code>'s default vector of colors. See the documentation of the latter function for further information. All arguments except <code>col</code> are possible.</dd></dl>

Arguments

A flashy color palette. — spaMM.colors

<dl>

 <dt>n</dt>
<dd>Number of color levels returned by the function. A calling graphic function with argument <code>nlevels</code> will typically 
 take the first (i.e., bluest) <code>nlevels</code> color levels. If <code>n</code>&lt;<code>nlevels</code>, the color levels are recycled</dd>

 <dt>redshift</dt>
<dd>The higher it is, the more the palette blushes....</dd>

 <dt>adjustcolor_args</dt>
<dd>Either NULL or a list of arguments for <code><a href='https://rdrr.io/r/grDevices/adjustcolor.html'>adjustcolor</a></code>, in which case <code>adjustcolor</code> is called to modify <code>spaMM.colors</code>'s default vector of colors. See the documentation of the latter function for further information. All arguments except <code>col</code> are possible.</dd>

</dl>

spaMM.colors: A flashy color palette.

Description

Usage

Value

Arguments

Details

Examples