Estimates the (bivariate) pair correlation functions of a point pattern, given an array of (bivariate) K functions.
# S3 method for fasp
pcf(X, ..., method="c")A function array (object of class "fasp",
see fasp.object)
representing an array of pair correlation functions.
This can be thought of as a matrix Y each of whose entries
Y[i,j] is a function value table (class "fv")
representing the pair correlation function between
points of type i and points of type j.
An array of multitype \(K\) functions
(object of class "fasp").
Arguments controlling the smoothing spline
function smooth.spline.
Letter "a", "b", "c" or "d" indicating the
method for deriving the pair correlation function from the
K function.
Adrian Baddeley Adrian.Baddeley@curtin.edu.au
and Rolf Turner rolfturner@posteo.net
The pair correlation function of a stationary point process is
$$
g(r) = \frac{K'(r)}{2\pi r}
$$
where \(K'(r)\) is the derivative of \(K(r)\), the
reduced second moment function (aka ``Ripley's \(K\) function'')
of the point process. See Kest for information
about \(K(r)\). For a stationary Poisson process, the
pair correlation function is identically equal to 1. Values
\(g(r) < 1\) suggest inhibition between points;
values greater than 1 suggest clustering.
We also apply the same definition to
other variants of the classical \(K\) function,
such as the multitype \(K\) functions
(see Kcross, Kdot) and the
inhomogeneous \(K\) function (see Kinhom).
For all these variants, the benchmark value of
\(K(r) = \pi r^2\) corresponds to
\(g(r) = 1\).
This routine computes an estimate of \(g(r)\)
from an array of estimates of \(K(r)\) or its variants,
using smoothing splines to approximate the derivatives.
It is a method for the generic function pcf.
The argument X should be
a function array (object of class "fasp",
see fasp.object)
containing several estimates of \(K\) functions.
This should have been obtained from alltypes
with the argument fun="K".
The smoothing spline operations are performed by
smooth.spline and predict.smooth.spline
from the modreg library.
Four numerical methods are available:
"a" apply smoothing to \(K(r)\), estimate its derivative, and plug in to the formula above;
"b" apply smoothing to \(Y(r) = \frac{K(r)}{2 \pi r}\) constraining \(Y(0) = 0\), estimate the derivative of \(Y\), and solve;
"c" apply smoothing to \(Z(r) = \frac{K(r)}{\pi r^2}\) constraining \(Z(0)=1\), estimate its derivative, and solve.
"d" apply smoothing to \(V(r) = \sqrt{K(r)}\), estimate its derivative, and solve.
Method "c" seems to be the best at
suppressing variability for small values of \(r\).
However it effectively constrains \(g(0) = 1\).
If the point pattern seems to have inhibition at small distances,
you may wish to experiment with method "b" which effectively
constrains \(g(0)=0\). Method "a" seems
comparatively unreliable.
Useful arguments to control the splines
include the smoothing tradeoff parameter spar
and the degrees of freedom df. See smooth.spline
for details.
Stoyan, D, Kendall, W.S. and Mecke, J. (1995) Stochastic geometry and its applications. 2nd edition. Springer Verlag.
Stoyan, D. and Stoyan, H. (1994) Fractals, random shapes and point fields: methods of geometrical statistics. John Wiley and Sons.
Kest,
Kinhom,
Kcross,
Kdot,
Kmulti,
alltypes,
smooth.spline,
predict.smooth.spline
# multitype point pattern
KK <- alltypes(amacrine, "K")
p <- pcf.fasp(KK, spar=0.5, method="b")
plot(p)
# strong inhibition between points of the same type
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