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spatstat (version 1.48-0)

spatstat-internal: Internal spatstat functions

Description

Internal spatstat functions.

Usage

"["(x, ...) "["(x, ...) <- value "["(x, ...) acedist.show(X, Y, n, d, timelag) acedist.noshow(X, Y, n, d) active.interactions(object) adaptcoef(new.coef, fitcoef, drop) adjustthinrange(ur,vstep,vr) affinexy(X, mat, vec, invert) affinexypolygon(p, mat, vec, detmat) ang2rad(ang, unit, start, clockwise) anycrossing.psp(A,B) apply23sum(x) applytolayers(L, FUN, ...) applyPolyclipArgs(x, p) Area.xypolygon(polly) areadelta2(X, r, ..., sparseOK) areaGain.diri(u, X, r, ..., W, verbose) areaGain.grid(u, X, r, ..., W, ngrid) areaLoss.diri(X, r, ..., W, subset) areaLoss.grid(X, r, ..., W, subset, method = c("count", "distmap"), ngrid = spatstat.options("ngrid.disc"), exact = FALSE) articlebeforenumber(k) assemble.plot.objects(xlim, ylim, ..., lines, polygon) AsymmDistance.psp(X, Y, metric, method) as.breakpts(...) "as.character"(x, ...) "as.data.frame"(x, ...) "as.data.frame"(x, ...) "as.double"(x, ...) "as.list"(x, ...) as.listof(x) "as.owin"(W, ...) as.units(s) as2vector(x) asNumericMatrix(x) assignDFcolumn(x, name, value, ...) augment.msr(x, ..., sigma) BartCalc(fY, fK) badprobability(x, NAvalue) bbEngine(...) bermantestEngine(model, covariate, which, alternative, ..., modelname, covname, dataname) bdrylength.xypolygon(polly) bdry.mask(W) bind.ratfv(x, numerator, denominator, labl, desc, preferred, ratio) blankcoefnames(x) blockdiagmatrix(...) blockdiagarray(...) bounding.box3(...) break.holes(x, splitby, depth, maxdepth) breakpts(val, maxi, even = FALSE, npos = NULL, step = NULL) breakpts.from.r(r) bt.frame(Q, trend, interaction, ..., covariates, correction, rbord, use.gam, allcovar) bw.optim(cv, h, iopt, ..., cvname, hname, criterion) calc.DR(COV, z, Dim) calc.NNIR(COV, z, pos, Dim) calc.SAVE(COV, z, Dim) calc.SIR(COV, z) calc.TSE(COV, z, pos, Dim1, Dim2) can.be.formula(x) cannot.update(...) cartesian(pp, markset, fac = TRUE) cat.factor(..., recursive=FALSE) cellmiddles(W, nx, ny, npix, distances) censtimeCDFest(o, cc, d, breaks, ..., KM, RS, HAN, RAW, han.denom, tt, pmax) change.default.expand(x, newdefault) checkbigmatrix(n, m, fatal, silent) checkfields(X,L) checksolve(M, action, descrip, target) check.finespacing(r, eps, win, rmaxdefault, context, action, rname) check.finite(x, context, xname, fatal, usergiven) check.hist.lengths(hist,breaks) check.in.range(x, r, fatal) check.mat.mul(A, B, Acols, Brows, fatal) check.named.list(x, nam, context, namopt, onError) check.named.vector(x, nam, context, namopt, onError) check.named.thing(x, nam, namopt, xtitle, valid, type, context, fatal) check.nvector(v, npoints, fatal, things, naok, warn, vname, oneok) check.nmatrix(m, npoints, fatal, things, naok, squarematrix, matchto, warn) check.1.integer(x, context, fatal) check.1.real(x, context, fatal) check.1.string(x, context, fatal) check.range(x, fatal) check.testfun(f, f1, X) choptext(..., prefix, indent) choptextline(st, w, prefix, indent) circticks(R, at, unit, start, clockwise, labels) clarkevansCalc(X, correction, clipregion, working) clip.psp(x, window, check=TRUE) cliprect.psp(x, window) clippoly.psp(s, window) closethresh(X,R,S,twice,...) "coef"(object, ...) "coef"(object, ...) "coef"(object, ...) coerce.marks.numeric(X, warn) "compatible"(A, B, ...) complaining(whinge, fatal, value) compileCDF(D, B, r, ..., han.denom, check) conform.ratfv(x) crosspairquad(Q,rmax,what) cobble.xy(x, y, f, fatal, ...) codetime(x, hms, what) col.args.to.grey(x, ...) colouroutputs(x) colouroutputs(x) <- value commasep(x, join, flatten) commonPolyclipArgs(..., p) conform.imagelist(X, Zlist) countingweights(id, areas, check = TRUE) CressieReadStatistic(OBS,EXP,lambda) CressieReadSymbol(lambda) CressieReadName(lambda) damaged.ppm(object) data.mppm(x) datagen.runifpointOnLines(n, L) datagen.runifpoisppOnLines(lambda, L) datagen.rpoisppOnLines(lambda, L, lmax, ..., check) default.clipwindow(object, epsilon) default.linnet.tolerance(L) default.n.tiling(X, nd, ntile, npix, eps, random, quasi, verbose) default.ntile(X) deltasuffstat(model, ..., restrict, dataonly, force, quadsub, sparseOK) Deviation(x, ref, leaveout, n, xi) dflt.redraw(button, name, env) densitycrossEngine(Xdata, Xquery, sigma, ..., weights, edge, varcov, diggle, sorted) densitypointsEngine(x, sigma, ..., kernel, scalekernel, weights, edge, varcov, leaveoneout, diggle, sorted, spill, cutoff) diagnose.ppm.engine(object, ..., type, typename, opt, sigma, rbord, compute.sd, compute.cts, envelope, nsim, nrank, rv, oldstyle, splineargs, verbose) diagramobj(X, ...) digital.volume(range, nval, vside) dilate.owin(...) "dim"(x) "dim"(x) "dim"(x) "dim"(x) "dim"(x) "dimnames"(x) "dimnames"(x) <- value "dimnames"(x) distpl(p, l) distppl(p, l) distppll(p, l, mintype, method, listit) distppllmin(p, l, big) distributecbind(x) dist2dpath(dist, method="C") divisors(n) do.as.im(x, action, ..., W, eps, dimyx, xy, na.replace) do.call.matched(fun, arglist, funargs, extrargs, matchfirst, sieve, skipargs) do.call.plotfun(fun, arglist, ...) do.call.without(fun, ..., avoid) do.istat(panel) doMultiStraussHard(iradii, hradii, types) dont.complain.about(...) dotexpr.to.call(expr, dot, evaluator) dppmFixIntensity(DPP, lambda, po) dppmFixAlgorithm(algorithm, changealgorithm, clusters, startpar) dropifsingle(x) dround(x) emptywindow(w) ensure2vector(x) ensure3Darray(x) envelopeEngine(X, fun, simul, nsim, nrank, ..., funargs, funYargs, verbose, clipdata, transform, global, ginterval, use.theory, alternative, scale, clamp, savefuns, savepatterns, saveresultof, weights, nsim2, VARIANCE, nSD, Yname, maxnerr, internal, cl, envir.user, expected.arg, do.pwrong, foreignclass, collectrubbish) envelopeProgressData(X, fun, ..., exponent, alternative, leaveout, scale, clamp, normalize, deflate, rmin, save.envelope, savefuns, savepatterns) envelopeTest(X, ..., exponent, alternative, rinterval, leaveout, scale, clamp, tie.rule, interpolate, save.interpolant, save.envelope, savefuns, savepatterns, Xname, verbose) "envelope"(Y, ..., Yname) "envelope"(Y, ..., rvals, observed, theory, funX, nsim, nsim2, jsim, jsim.mean, type, alternative, scale, clamp, csr, use.theory, nrank, ginterval, nSD, savefuns, check, Yname, do.pwrong, weights, precomputed) equalpairs(U, X, marked=FALSE) equalpairs.quad(Q) equals.quad(Q) equalsfun.quad(Q) equispaced(z, reltol) eratosthenes(nmax, startset) erodemask(w,r,strict) erode.owin(...) evalCovar(model, covariate, ...) "evalCovar"(model, covariate, ..., lambdatype, dimyx, eps, jitter, modelname, covname, dataname) "evalCovar"(model, covariate, ..., lambdatype, eps, nd, jitter, modelname, covname, dataname) evalCovariate(covariate, locations) evalInteraction(X,P,E,interaction,correction,...,precomputed,savecomputed) evalInterEngine(X,P,E,interaction,correction,..., Reach,precomputed,savecomputed) evalPairPotential(X,P,E,pairpot,potpars,R) evaluate2Dkernel(kernel, x, y, sigma, varcov, ..., scalekernel) even.breaks.owin(w) evenly.spaced(x, tol) exactdt(X, ...) exactPdt(w) exhibitStringList(prefix, strings) existsSpatstatVariable(name) expand.polynom(f) expandSpecialLists(x, special) expandwinPerfect(W, expand, amount) explain.ifnot(expr, context) "extractAIC"(fit, scale = 0, k = 2, ...) extractAtomicQtests(x) fakecallstring(fname, parlist) fakemaintitle(bb, main, ...) "family"(object, ...) fave.order(x) f3engine(x, y, z, box, vside, range, nval, correction) f3Cengine(x, y, z, box, vside, rmax, nrval) fasp(fns, which, formulae, dataname, title, rowNames, colNames, checkfv) fastFindInterval(x, b, labels, reltol) fill.coefs(coefs, required) fillseq(x, step) findbestlegendpos(...) findCovariate(covname, scope, scopename=NULL) findcbind(root, depth, maxdepth) findfirstfactor(x) firstfactor(x) fii(interaction, coefs, Vnames, IsOffset) fillNA(x, value) flat.deparse(x) flatfname(x) flipxypolygon(p) fontify(x, font) forbidNA(x, context, xname, fatal, usergiven) forbid.logi(object) "format"(x, ..., collapse, modifier) FormatFaspFormulae(f, argname) framebottomleft(w) fvexprmap(x) fvlabels(x, expand=FALSE) fvlabels(x) <- value fvlabelmap(x, dot=TRUE) fvlegend(object, elang) g3engine(x, y, z, box, rmax, nrval, correction) g3Cengine(x, y, z, box, rmax, nrval) geomseq(from, to, length.out) greatest.common.divisor(n,m) getdataname(defaultvalue, ..., dataname) getdataobjects(nama, envir, datalist, fatal) getfields(X, L, fatal = TRUE) getglmdata(object, drop=FALSE) getglmfit(object) getglmsubset(object) getlambda.lpp(lambda, X, ..., update) getlastshift(X) getppmdatasubset(object) getppmOriginalCovariates(object) getRandomFieldsModelGen(model) getSpatstatVariable(name) getSumFun(abbreviation, classname, ismarked, fatal) geyercounts(U,X,r,sat,Xcounts,EqualPairs) geyerdelta2(X,r,sat,...,sparseOK) GLMpredict(fit, data, coefs, changecoef, type) good.names(nama, defaults, suffices) good.correction.K(X) graphicsPars(key)
gridindex(x, y, xrange, yrange, nx, ny) grid1index(x, xrange, nx) grokIndexVector(ind, len, nama) grow.mask(M, xmargin=0, ymargin=xmargin) gsubdot(replacement, x) hackglmmPQL(fixed, random, family, data, correlation, weights, control, niter, verbose, subset, ..., reltol) hasenvelope(X, E) HermiteCoefs(order) handle.r.b.args(r = NULL, breaks = NULL, window, pixeps = NULL, rmaxdefault) handle.rshift.args(W, ..., radius, width, height, edge, clip, edgedefault) "head"(x,n,...) hierarchicalordering(i, s) hiermat(x, h) ho.engine(model, ..., nsim, nrmh, start, control, verb) hsvNA(h, s, v, alpha) IdenticalRows(i,j,a,b) identical.formulae(x,y) idorempty(w, r, caller) ifelseAB(test, a, b) ifelseAX(test, a, x) ifelseXB(test, x, b) ifelseXY(test, x, y) ifelse1NA(test) ifelse0NA(test) ifelseNegPos(test, x) illegal.iformula(ifmla, itags, dfvarnames) implemented.for.K(correction, windowtype, explicit) impliedpresence(tags, formula, df, extranames=character(0)) impliedcoefficients(object, tag) indexCartesian(nn) inject.expr(base, expr) inpoint(W) insertinlist(x, i, y) inside.range(x, r) inside.triangle(x, y, xx, yy) inside.xypolygon(pts, polly, test01, method) instantiate.interact(x, par) interactionfamilyname(x) intermaker(f, blank) intersect.ranges(a,b,fatal) intX.owin(w) intX.xypolygon(polly) intY.owin(w) intY.xypolygon(polly) invokeColourmapRule(colfun, x, ..., zlim, colargs) is.atomicQtest(x) is.blank(s) is.cadlag(s) is.col.argname(x) is.data(Q) is.expandable(x) "is.expandable"(x) "is.expandable"(x) is.fv(x) is.hole.xypolygon(polly) is.hyperframe(x) is.infline(x) is.interact(x) "is.marked"(...) "is.marked"(X, ...) "is.marked"(X, ...) "is.marked"(X, na.action="warn", ...) is.mppm(x) "is.multitype"(X, ...) "is.multitype"(X, ...) "is.multitype"(X, na.action="warn", ...) is.parseable(x) "is.poisson"(x) is.pp3(x) is.ppx(x) is.prime(n) is.psp(x) is.sob(x) is.tess(x) k3engine(x, y, z, box, rmax, nrval, correction) Kborder.engine(X, rmax, nr, correction, weights, ratio) Knone.engine(X, rmax, nr, weights, ratio) Krect.engine(X, rmax, nr, correction, weights, ratio, fname) Kount(dIJ, bI, b, breaks) Kwtsum(dIJ, bI, wIJ, b, w, breaks) Kpcf.kppm(model, what) killinteraction(model) km.rs.opt(o, cc, d, breaks, KM, RS) kppmComLik(X, Xname, po, clusters, control, weightfun, rmax, algorithm, DPP, ...) kppmMinCon(X, Xname, po, clusters, control, statistic, statargs, algorithm, DPP, ...) kppmPalmLik(X, Xname, po, clusters, control, weightfun, rmax, algorithm, DPP, ...) kraever(package, fatal) kraeverRandomFields() "labels"(object, ...) least.common.multiple(n,m) "levels"(x) "levels"(x) <- value levelsAsFactor(x) lhs.of.formula(x) linearKengine(X, ..., r, reweight, denom, correction, showworking) linearKmulti(X, I, J, r, ..., correction) linearKmulti.inhom(X, I, J, lambdaI, lambdaJ, r, ..., correction, normalise) linearpcfengine(X, ..., r, reweight, denom, correction) linearpcfmulti(X, I, J, r, ..., correction) linearpcfmulti.inhom(X, I, J, lambdaI, lambdaJ, r, ..., correction, normalise) linearKmultiEngine(X, I, J, ..., r, reweight, denom, correction, showworking) linearPCFmultiEngine(X, I, J, ..., r, reweight, denom, correction, showworking) listof(...) localKengine(X, ..., wantL, lambda, correction, verbose, rvalue) localpcfengine(X, ..., delta, rmax, nr, stoyan, lambda) localpcfmatrix(X, i, ..., lambda, delta, rmax, nr, stoyan) local2lpp(L, seg, tp, X, df.only) logicalIndex(i, nama, len) logi.dummy(X, dummytype, nd, mark.repeat, ...) logi.engine(Q, trend, interaction, ..., covariates, subsetexpr, correction, rbord, covfunargs, allcovar, vnamebase, vnameprefix, justQ, savecomputed, precomputed, VB) "logLik"(object, ...) lty2char(i) makeLinnetTolerance maskLaslett(X, ..., eps, dimyx, xy, oldX, verbose, plotit) matchNameOrPosition(expected, avail) match2DkernelName(kernel) padtowidth(a, b, justify) parbreak(terse) passthrough(.Fun, ..., .Fname) paste.expr(x) pasteN(...) plan.legend.layout(B, ..., side, sep, size, sep.frac, size.frac, started, map) PoisSaddle(beta, fi) PoisSaddleArea(beta, fi) PoisSaddleGeyer(beta, fi) PoisSaddlePairwise(beta, fi) polyLaslett(X, ..., oldX, verbose, plotit) polytileareaEngine(P, xrange, yrange, nx, ny) positiveIndex(i, nama, len) prettyinside(x, ...) prettydiscrete(x, n) "print"(x, ...) "plot"(x, ...) putSpatstatVariable(name, value) "["(x, i, ...) "["(x, i, drop, ...) lookup.im(Z, x, y, naok, strict) lookup2DkernelInfo(kernel) majorminorversion(v) make.even.breaks(bmax, npos, bstep) makefvlabel(op, accent, fname, sub, argname) make.parseable(x) makeunits(sing, plur, mul) mapstrings(x, map) markappend(...) markcbind(...) markformat(x) "markformat"(x) "markformat"(x) "markformat"(x) "markformat"(x) mark.scale.default(marx, w, markscale, maxsize, meansize, characters) markspace.integral(X) "marks"(x, ...) "marks"(x, dfok=FALSE, ...) markappendop(x, y) x %mapp% y marksubset(x, index, format) marksubsetop(x, i) x %msub% i markreplicateop(x, n) x %mrep% n mask2df(w) match.kernel(kernel) matcolall(x) matcolany(x) matcolsum(x) matrixsample(mat, newdim, phase, scale, na.value) matrowall(x) matrowany(x) matrowsum(x) maxflow(costm) mctestSigtraceEngine(R, devdata, devsim, ..., interpolate, confint, alpha, exponent, unitname) meanlistfv(z, ...) meanX.owin(w) meanY.owin(w) model.se.image(fit, W, ..., what) modelFrameGam(formula, ...) mpl.engine(Q, trend, interaction, ..., covariates, subsetexpr, covfunargs, correction, rbord, use.gam, gcontrol, GLM, GLMfamily, GLMcontrol, famille, forcefit, nd, eps, allcovar, callstring, precomputed, savecomputed, preponly, rename.intercept, justQ, weightfactor) mpl.get.covariates(covariates, locations, type, covfunargs, need.deriv) mpl.prepare(Q, X, P, trend, interaction, covariates, want.trend, want.inter, correction, rbord, Pname, callstring, ..., subsetexpr, covfunargs, allcovar, precomputed, savecomputed, vnamebase, vnameprefix, warn.illegal, warn.unidentifiable, weightfactor, skip.border) mpl.usable(x) MultiPair.checkmatrix(mat, n, matname, naok, zerook, asymmok) multiplicityNumeric(x) multiply.only.finite.entries(x, a) na.handle.im(X, na.replace) "names"(x) <- value "names"(x) "names"(x) <- value natozero(x) nearest.pixel(x, y, im) nearest.valid.pixel(x, y, im) newformula(old, change, eold, enew) newstyle.coeff.handling(object) niceround(x, m) nncleanEngine(kthNND, k, d, ..., tol, maxit, plothist, lineargs, verbose, Xname) nndcumfun(X, ..., r) no.trend.ppm(x) n.quad(Q) numalign(i, nmax, zero) numberwithunit(x, u) numeric.columns(M, logical, others) nzpaste(..., sep, collapse) objsurfEngine(objfun, optpar, objargs, ..., dotargs, objname, ngrid, ratio, verbose) offsetsinformula(x) onecolumn(m) optimStatus(x, call) printStatus(x, errors.only) signalStatus(x, errors.only) orderstats(x, k, decreasing) orderwhich(x, k, decreasing) ordinal(k) ordinalsuffix(k) a %orifnull% b outdated.interact(object) overlap.trapezium(xa, ya, xb, yb, verb = FALSE) overlap.xypolygon(P, Q) oversize.quad(Q, ..., nU, nX, p) owinpolycheck(W, verbose=TRUE) owinpoly2mask(w, rasta, check=TRUE) owin2polypath(w) "pairs"(..., plot=TRUE) "pairs"(..., plot=TRUE) param.quad(Q) paren(x, type) partialModelMatrix(X,D,model,callstring,...) pasteFormula(f) pcf3engine(x, y, z, box, rmax, nrval, correction, delta) pcfmulti.inhom(X, I, J, lambdaI = NULL, lambdaJ = NULL, ..., r = NULL, breaks = NULL, kernel = "epanechnikov", bw = NULL, stoyan = 0.15, correction = c("translate", "Ripley"), sigma = NULL, varcov = NULL, Iname = "points satisfying condition I", Jname = "points satisfying condition J") pickoption(what="option", key, keymap, ..., exact=FALSE, list.on.err=TRUE, die=TRUE, multi=FALSE, allow.all=TRUE) plotEachLayer(x, ..., main, plotargs, add, show.all, do.plot) ploterodewin(W1, W2, col.edge, col.inside, do.plot, ...) ploterodeimage(W, Z, ..., Wcol, rangeZ, colsZ, do.plot) plot3Dpoints(xyz, eye, org, ..., type, xlim, ylim, zlim, add, box, main, cex, box.back, box.front) plotPolygonBdry(x, ...) "plot"(x, ..., do.points=FALSE) "plot"(x, ...) "plot"(x, ...) "plot"(x, ..., showopt, optargs) "plot"(x, ..., shade) "plot"(x, ...) "plot"(x, ...) "plot"(x, addmatch = NULL, main = NULL, ...) "plot"(x, ...) "plot"(x, ..., add, main, tag, coeff, xvariable, col, lty, lwd, col.opt, lty.opt, lwd.opt) "plot"(x, ..., limits=TRUE, monochrome=spatstat.options('monochrome'), limcol=if(monochrome) "black" else "red") "plot"(x, ..., xlab, ylab) "plot"(x, fmla, ..., lty = NULL, col = NULL, lwd = NULL, lty.theo = NULL, col.theo = NULL, lwd.theo = NULL, lwd.mean = if (meanonly) 1 else NULL, lty.mean = lty, col.mean = col, separately = FALSE, meanonly = FALSE, main = if (meanonly) "group means" else NULL, xlim = NULL, ylim = NULL, ylab = NULL, legend = !add, legendpos = "topleft", lbox = FALSE, add = FALSE) polynom(x, ...) ppllengine(X, Y, action="project", check=FALSE) "ppm"(Q, trend, interaction, ..., covariates, data, covfunargs, subset, correction, rbord, use.gam, method, forcefit, emend, project, prior.mean, prior.var, nd, eps, gcontrol, nsim, nrmh, start, control, verb, callstring) ppmCovariates(model) ppmDerivatives(fit, what, Dcovfun, loc, covfunargs) ppmInfluenceEngine(fit, what, ..., iScore, iHessian, iArgs, drop, method, precomputed, sparseOK, fitname, multitypeOK) pppdist.mat(X, Y, cutoff = 1, q = 1, matching = TRUE, precision = 9, approximation = 10) pppdist.prohorov(X, Y, n, dfix, type, cutoff, matching, ccode, auction, precision, approximation) ppsubset(X, I, Iname, fatal) prange(x) "predict"(object, newdata, type, se.fit, dispersion, terms, na.action, ...) prefixfv(x, tagprefix, descprefix, lablprefix, whichtags) prepareTitle(main) primefactors(n, prmax) primesbelow(nmax) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, digits, ...) "print"(x, ...) "print"(x, ...) "print"(x, ..., tight) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ..., family, brief, banner) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ..., prefix=TRUE) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ..., dp=3) "print"(x, ...) "print"(x, ..., brief) "print"(x, ...) "print"(x, ..., dp) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ...) "print"(x, ..., brief=FALSE) "print"(x, ...) "print"(x, ...) "print"(x, ...) project3Dhom(xyz, eye, org, vert) prolongseq(x, newrange, step) putlastshift(X, vec) quad(data, dummy, w, param) quad.mppm(x) quadBlockSizes(nX, nD, p, nMAX, announce) RandomFieldsSafe() ratfv(df, numer, denom, ..., ratio) ratiotweak(a, b, overzero, zerozero) recognise.spatstat.type(x) rectquadrat.breaks(xr, yr, nx = 5, ny = nx, xbreaks = NULL, ybreaks = NULL) rectquadrat.countEngine(x, y, xbreaks, ybreaks, weights) reduceformula(fmla, deletevar, verbose) reheat(model, invtemp) relatively.prime(n, m) RelevantDeviation(x, alternative, clamp, scaling) repair.image.xycoords(x) replacementIndex(ii, stuff) resolveEinfo(x, what, fallback, warn, atomic) resolve.vargamma.shape(..., nu.ker, nu.pcf, default = FALSE) rgbNA(red, green, blue, alpha, maxColorValue) rhs.of.formula(x, tilde) rhohatEngine(model, covariate, reference, volume, ..., weights, method, horvitz, smoother, resolution, n, bw, adjust, from, to, bwref, covname, covunits, confidence, modelcall, callstring) rhohatCalc(ZX, Zvalues, lambda, denom, ..., weights, lambdaX, method, horvitz, smoother, n, bw, adjust, from, to, bwref, covname, confidence, covunits, modelcall, callstring, savestuff) rMaternInhibition(type, kappa, r, win, stationary, ..., nsim, drop) RmhExpandRule(nama) rocData(covariate, nullmodel, ..., high) rocModel(lambda, nullmodel, ..., high) romansort(x) rmhsnoop(..., Wsim, Wclip, R, xcoords, ycoords, mlevels, mcodes, irep, itype, proptype, proplocn, propmark, propindx, numerator, denominator) roseContinuous(ang, rad, unit, ..., start, clockwise, main, labels, at, do.plot) ruletextline(ch, n, terse) quadrat.testEngine(X, nx, ny, alternative, method, conditional, CR, ..., nsim, Xcount, xbreaks, ybreaks, tess, fit, Xname, fitname) quadscheme.replicated(data, dummy, method, ...) quadscheme.spatial(data, dummy, method, ...) pointgrid(W, ngrid) rastersample(X, Y) rasterx.mask(w, drop) rastery.mask(w, drop) rasterxy.mask(w, drop) rasterx.im(x) rastery.im(x) rasterxy.im(x, drop) rebadge.fv(x, new.ylab, new.fname, tags, new.desc, new.labl, new.yexp, new.dotnames, new.preferred, new.formula, new.tags) rebadge.as.crossfun(x, main, sub, i, j) rebadge.as.dotfun(x, main, sub, i) rebound(x, rect) "rebound"(x, rect) "rebound"(x, rect) "rebound"(x, rect) "rebound"(x, rect) reconcile.fv(...) repair.old.factor.image(x) reincarnate.interact(object) resid4plot(RES, plot.neg, plot.smooth, spacing, outer, srange, monochrome, main, xlab, ylab, rlab, col.neg, col.smooth, ...) resid1plot(RES, opt, plot.neg, plot.smooth, srange, monochrome, main, add, show.all, do.plot, col.neg, col.smooth, ...) resid1panel(observedX, observedV, theoreticalX, theoreticalV, theoreticalSD, xlab,ylab, ..., do.plot) resolve.defaults(..., .MatchNull=TRUE, .StripNull=FALSE) resolve.1.default(.A, ...) resolve.2D.kernel(..., sigma, varcov, x, mindist, adjust, bwfun, allow.zero) restrict.mask(M, W) reverse.xypolygon(p, adjust=FALSE) reversePolyclipArgs(x, p) revcumsum(x) rmax.Rigid(X, g) rmax.rule(fun, W, lambda) rotxy(X, angle = pi/2) rotxypolygon(p, angle = pi/2) rmhResolveControl(control, model) rmhResolveExpansion(win, control, imagelist, itype) rmhResolveTypes(model, start, control) rmhSnoopEnv(Xinit, Wclip, R) "rmhcontrol"(...) "rmhcontrol"(...) rmhEngine(InfoList, ..., verbose, kitchensink, preponly, snoop, overrideXstart, overrideclip) "rmhmodel"(model, ...) "rmhstart"(start, ...) "rmhstart"(start, ...) rmpoint.I.allim(n, f, types) "row.names"(x) "row.names"(x) <- value rpoint.multi(n, f, fmax, marks, win, giveup, verbose, warn, nsim, drop) runifpoispp(lambda, win, ..., nsim, drop) runifpoisppOnLines(lambda, L, nsim) runifrect(n, win, nsim, drop) safedeldir(X) safelookup(Z, x, factor, warn) samefunction(f, g) "scalardilate"(X, f, ...) "scalardilate"(X, f, ...) "scalardilate"(X, f, ...) scanmeasure(X, ...) "scanmeasure"(X, r, ..., method) "scanmeasure"(X, r, ...) scanPoisLRTS(nZ, nG, muZ, muG, alternative) scanBinomLRTS(nZ, nG, muZ, muG, alternative) second.moment.calc(x, sigma, edge, what, ..., varcov=NULL, expand=FALSE, debug=FALSE) second.moment.engine(x, sigma, edge, what, ..., kernel, obswin, varcov, npts, debug) sensiblevarname(guess, fallback, maxlen) sewpcf(d, w, denargs, lambda2area, divisor) sewsmod(d, ff, wt, Ef, rvals, method="smrep", ..., nwtsteps=500) "shift"(X, ...) "shift"(X, ...) "shift"(X, ...) "shift"(X, ...) "shift"(X, ...) "shift"(X, ...) shiftxy(X, vec = c(0, 0)) shiftxypolygon(p, vec = c(0, 0)) short.deparse(x, maxlen) simplenumber(x, unit, multiply, tol) simplify.xypolygon(p, dmin) "simulate"(object, ...) simulrecipe(type, expr, envir, csr, pois, constraints) singlestring(s, coll) slr.prepare(CallInfo, envir, data, dataAtPoints, splitby, clip) slrAssemblePixelData(Y, Yname, W, covimages, dataAtPoints, pixelarea) "Smooth"(X, ...) smoothcrossEngine(Xdata, Xquery, values, sigma, ..., weights, varcov, sorted) smoothpointsEngine(x, values, sigma, ..., weights, varcov, leaveoneout, sorted, cutoff) "sort"(x, ...) sortalongsegment(df) spatstat.rawdata.location(...) spatstat.xy.coords(x, y) spatstatClusterModelInfo(name, onlyPCP) spatstatDPPModelInfo(model) spatstatLocator(n, type, ...) spatstatRmhInfo(cifname) spatialCDFframe(model, covariate, ...) spatialCDFtest(model, covariate, test, ..., dimyx, eps, jitter, nsim, verbose, modelname, covname, dataname) sphere.volume(range, nval = 10)
splitHybridInteraction(coeffs, inte) sp.foundclass(cname, inlist, formalname, argsgiven) sp.foundclasses(cnames, inlist, formalname, argsgiven) startinrange(x0, dx, r) store.versionstring.spatstat() "str"(object, ...) strausscounts(U,X,r,EqualPairs) strsplitretain(x, split) substringcount(x,y) suffloc(object) suffstat.generic(model, X, callstring) suffstat.poisson(model, X, callstring) summarise.trend(trend, w, a) "summary"(object,...) "summary"(object,...) "summary"(object, ..., brief=FALSE) "summary"(object, ..., checkdup=FALSE) "summary"(object, ...) "summary"(object, ..., brief=FALSE) "summary"(object, ...) "summary"(object, ...) "summary"(object, ...) "summary"(object, ...) "summary"(object, ...) "summary"(object, ...) sumsymouter(x, w) superimposeMarks(arglist, nobj) symbolmaptype(x) sympoly(x, y, n) "tail"(x,n,...) tensor1x1(A,B) termsinformula(x) test.crossing.psp(A,B) test.selfcrossing.psp(A) there.is.no.try(...) thinjump(n, p) tilecentroids(W, nx, ny) trap.extra.arguments(..., .Context, .Fatal) trianglediameters(iedge, jedge, edgelength, ..., nvert, dmax, check) trim.mask(M, R, tolerant) truncline(x, nc) tapplysum(x, flist, do.names, na.rm) tweak.fv.entry(x, current.tag, new.labl, new.desc, new.tag) tweak.coefs(model, new.coef) x %unit% u "unitname"(x) "unitname"(x) <- value unparen(x) "unstack"(x, ...) "unstack"(x, ...) unstackFilter(x) "update"(object, ...) "update"(object, ..., envir) "update"(object, ...) uptrimat(x) validradius(r, caller) validate2Dkernel(kernel, fatal) validate.angles(angles, unit, guess) validate.lpp.coords(X, fatal, context) validate.mask(w, fatal=TRUE) validate.quad(Q, fatal, repair, announce) validposint(n, caller, fatal) vanilla.fv(x) varcountEngine(g, B, lambdaB, f) variablesinformula(x) variablesintext(x)
verbalogic(x, op) versionstring.interact(object) versionstring.ppm(object) versionstring.spatstat() verifyclass(X, C, N = deparse(substitute(X)), fatal = TRUE) verify.xypolygon(p, fatal=TRUE) "Window"(X, ...) "Window"(X, ..., check=TRUE) <- value "Window"(X, ..., check=TRUE) <- value warn.ignored.args(..., context) warn.once(key, ...) waxlyrical(type, terse) windows.mppm(x) w.quad(Q) x.quad(Q) y.quad(Q) xy.grid(xr, yr, nx, ny, dx, dy) X2testEngine(OBS, EXP, ..., method, CR, df, nsim, conditional, alternative, testname, dataname) "xtfrm"(x) xypolyselfint(p, eps, proper, yesorno, checkinternal) xypolygon2psp(p, w, check)
sparse3Darray(i,j,k,x,dims,dimnames,strict,nonzero) as.sparse3Darray(x, ...) "dim"(x) "dim"(x) <- value "dimnames"(x) "dimnames"(x) <- value "print"(x, ...) "aperm"(a, perm, resize, ...) "as.array"(x, ...) "["(x, i, j, k, drop, ...) "["(x, i, j, k, ...) <- value "anyNA"(x, recursive) RelevantZero(x) RelevantEmpty(x) isRelevantZero(x) unionOfSparseIndices(A,B) Math(x, ...) Ops(e1, e2) Summary(..., na.rm = FALSE)
inside3Darray(d, i, j, k) SparseEntries(x) EntriesToSparse(df, dims) mapSparseEntries(x, margin, values, conform, across) applySparseEntries(x, f, ...) sumsymouterSparse(x, w, dbg) tenseur(A, B, alongA, alongB) marginSums(X, MARGIN) rbindCompatibleDataFrames(x) bind.sparse3Darray(A, B, along) exceedsMaxArraySize(...)
spatstatDiagnostic(msg)

Arguments

Details

These internal spatstat functions are not usually called directly by the user. Their names and capabilities may change without warning from one version of spatstat to the next.