This function reads a BiblioSpec generated file and returns
a list of tandem mass specs (psm objects),
peptide assignments, retention times, and
modifications records. The type of the data structire which is
returned is called psmSet.
Usage
read.bibliospec(file)
Arguments
file
the name of the BiblioSpec generated SQLite file.
Value
It returns a list which can be read by the genSwathIonLib
function and the protViz::peakplot function.
Details
The function performs a SQL query on the SQLite files generated by
bibliospec using the RSQLite package.
The function is required for generating spec libraries used
in a SWATH workflow.