spliceR (version 1.14.0)

conditions: Returns sample condictions of an SpliceRList or an CuffSet object

Description

Returns samples/condictions of an SpliceRList or an CuffSet object.

Usage

conditions(object)

Arguments

object

a SpliceRList object or a CuffSet object.

Value

A character vector, giving the samples/conditions.

Details

This helper function returns the "conditions" slot of a SpliceRList, or the "sample" slot of a CuffSet.

References

Vitting-Seerup K , Porse BT, Sandelin A, Waage J. (2014) spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data. BMC Bioinformatics 15:81.

Examples

#Load cufflinks example data
cuffDB <- prepareCuffExample()

conditions(cuffDB)

#Generate SpliceRList from cufflinks data
cuffDB_spliceR <- prepareCuff(cuffDB)

conditions(cuffDB_spliceR)