choice_c,report_sea_age-method: command line interface for report_sea_age class

Description

#' The choice_c method fills in the data slot for classes ref_dc-class, ref_taxa-class, ref_stage-class, ref_par-class and two slots of ref_horodate-class and then uses the choice_c methods of these object to select the data.

Usage

# S4 method for report_sea_age
choice_c(
  object,
  dc,
  taxa = 2220,
  stage = c("5", "11", "BEC", "BER", "IND"),
  par = c("1786", "1785", "C001", "A124"),
  horodatedebut,
  horodatefin,
  limit1hm,
  limit2hm,
  silent = FALSE
)

Value

An object of class report_sea_age-class

Arguments

object: An object of class report_sea_age-class
dc: A numeric or integer, the code of the dc, coerced to integer,see choice_c,ref_dc-method
taxa: '2220=Salmo salar', these should match the ref.tr_taxon_tax referential table in the stacomi database, see choice_c,ref_taxa-method
stage: '5','11','BEC','BER','IND'
par: Parameters chosen for the report are measured body size (1786), measured fork length (1785),video size (C001) and number of year at sea (A124)
horodatedebut: The starting date as a character, formats like %Y-%m-%d or %d-%m-%Y can be used as input
horodatefin: The finishing date of the report, for this class this will be used to calculate the number of daily steps.
limit1hm: Size limit of a salmon for an one sea winter fish
limit2hm: Size limit of a salmon for a two sea winter fish
silent: Default FALSE, if TRUE the program should no display messages

Author

Cedric Briand cedric.briand@eptb-vilaine.fr