strataG (version 1.0.5)

jackHWE: Hardy-Weinberg Equlibrium Jackknife

Description

Test influence of samples on Hardy-Weinberg equilibrium via jackknife.

Usage

jackHWE(g, exclude.num = 1, min.hwe.samples = 5, show.progress = TRUE, use.genepop = FALSE, ...)
jackInfluential(jack.result, alpha = 0.05)
"plot"(x, main = "", ...)

Arguments

g

a gtypes object.

exclude.num

Number of samples to exclude at a time.

min.hwe.samples

minimum samples needed to calculate HWE.

show.progress

logical. Show progress of jackknife?

use.genepop

logical. Use GENEPOP to calculate HWE p-values? If FALSE then hw.test is used.

...

other arguments to be passed to GENEPOP.

jack.result

result from run of jackHWE.

alpha

critical value to determine if exclusion is "influential".

x

result from a call to jackInfluential.

main

main title for influential sample plots from plot.jack.influential.

Value

jackHWE returns a list with: returns a list with:jackInfluential returns a list with: returns a list with:

Details

References

Morin, P.A., R.G. LeDuc, F.I. Archer, K.K. Martien, R. Huebinger, J.W. Bickham, and B.L. Taylor. 2009. Significant deviations from Hardy-Weinberg equilibirum caused by low levels of microsatellite genotyping errors. Molecular Ecology Resources 9:498-504.

See Also

hweTest