qaqc

optional label for output folder and prefix for files.

label

optional arguments to pass on to summary functions.


Conducts a suite of QA/QC tests. Summarizes missing data and 
  homozygosity by individual and locus, and looks for duplicate genotypes 
  (see <code><a rd-options="" href="/link/dupGenotypes?package=strataG&version=1.0.5" data-mini-rdoc="strataG::dupGenotypes">dupGenotypes</a></code>). For sequence data, identifies low 
  frequency substitutions (see <code><a rd-options="" href="/link/lowFreqSubs?package=strataG&version=1.0.5" data-mini-rdoc="strataG::lowFreqSubs">lowFreqSubs</a></code>), and computes 
  haplotype likelihoods (see <code><a rd-options="" href="/link/haplotypeLikelihoods?package=strataG&version=1.0.5" data-mini-rdoc="strataG::haplotypeLikelihoods">haplotypeLikelihoods</a></code>).


A toolkit for analyzing stratified population genetic data.

Eric Archer

strataG

Summaries and Population Structure Analyses of Genetic Data

qaqc function


Conducts a suite of QA/QC tests. Summarizes missing data and 
  homozygosity by individual and locus, and looks for duplicate genotypes 
  (see <code><a rd-options='' href='dupGenotypes'>dupGenotypes</a></code>). For sequence data, identifies low 
  frequency substitutions (see <code><a rd-options='' href='lowFreqSubs'>lowFreqSubs</a></code>), and computes 
  haplotype likelihoods (see <code><a rd-options='' href='haplotypeLikelihoods'>haplotypeLikelihoods</a></code>).


qaqc: Quality Assurance/Quality Control

Description

Usage

Arguments

Value